SMTL ID : 8xv6.2 (1 other biounit)

Crystal structure of PHD domain of UHRF1 in complex with mStella peptide (residues 85-119)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 10 residues within 4Å: Chain A: P.8, S.9, C.10, D.15, C.24 Chain B: L.21, I.24, E.25 Ligands: ZN.3, SCN.8 No protein-ligand interaction detected (PLIP) SCN.2: 3 residues within 4Å: Chain A: H.27, E.70 Ligands: ZN.7 No protein-ligand interaction detected (PLIP) SCN.8: 8 residues within 4Å: Chain A: D.15, C.24 Chain B: L.11, R.20, L.21, I.24 Ligands: SCN.1, ZN.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.32

5 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: C.10, D.15, C.24 Chain B: L.21 Ligands: SCN.1, SCN.8 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.15, A:C.24 ZN.4: 4 residues within 4Å: Chain A: C.10, C.13, C.21, C.24 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.10, A:C.13, A:C.21, A:C.24 ZN.5: 4 residues within 4Å: Chain A: C.26, C.29, H.49, C.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:C.29, A:H.49, A:C.52 ZN.6: 4 residues within 4Å: Chain A: C.41, C.44, C.68, C.71 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:C.44, A:C.68, A:C.71 ZN.7: 3 residues within 4Å: Chain A: H.27, E.70 Ligands: SCN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.27, A:E.70, A:E.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, X. et al., Crystal structure of PHD domain of UHRF1 in complex with mStella peptide (residues 85-119). To Be Published

Release Date

2024-11-06

Peptides

E3 ubiquitin-protein ligase UHRF1: A
Developmental pluripotency-associated protein 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

E3 ubiquitin-protein ligase UHRF1

Developmental pluripotency-associated protein 3

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