- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-hexamer
- Ligands
- 5 x OAA: OXALOACETATE ION(Non-covalent)
OAA.1: 8 residues within 4Å:- Chain A: H.238, N.242, H.274, H.320, R.329, F.397, R.401
- Chain B: R.421
12 PLIP interactions:11 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:N.242
- Hydrogen bonds: A:N.242, A:R.329
- Water bridges: A:H.274, A:H.320
- Salt bridges: A:H.238, A:H.238, A:H.274, A:H.320, A:R.329, A:R.401, B:R.421
OAA.3: 5 residues within 4Å:- Chain B: H.238, N.242, H.274, R.329, R.401
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:N.242
- Hydrogen bonds: B:H.238, B:N.242, B:R.401, B:R.401
- Salt bridges: B:H.238, B:H.238, B:R.329, B:R.401
OAA.4: 8 residues within 4Å:- Chain D: H.238, N.242, H.274, H.320, R.329, R.401
- Chain F: R.421
- Ligands: COA.5
9 PLIP interactions:1 interactions with chain F, 8 interactions with chain D- Salt bridges: F:R.421, D:H.238, D:H.238, D:H.274, D:H.320, D:R.329, D:R.401
- Hydrogen bonds: D:R.329, D:R.329
OAA.6: 4 residues within 4Å:- Chain E: H.238, N.242, H.274, R.401
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:N.242
- Hydrogen bonds: E:H.238, E:N.242, E:N.242
- Water bridges: E:E.239, E:R.401
- Salt bridges: E:H.238, E:H.238, E:H.274, E:R.401
OAA.7: 9 residues within 4Å:- Chain D: R.421
- Chain F: H.238, N.242, H.274, H.320, R.329, F.397, R.401
- Ligands: ACO.8
11 PLIP interactions:1 interactions with chain D, 10 interactions with chain F- Salt bridges: D:R.421, F:H.238, F:H.274, F:H.320, F:H.320, F:R.329, F:R.401
- Hydrophobic interactions: F:N.242
- Hydrogen bonds: F:R.401, F:R.401
- Water bridges: F:A.321
- 2 x ACO: ACETYL COENZYME *A(Non-covalent)
ACO.2: 7 residues within 4Å:- Chain A: G.40, R.43, A.321
- Chain B: R.22, R.165, M.416, P.418
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:P.418
- Hydrogen bonds: B:R.22, B:R.22, B:R.165, A:A.321
- Water bridges: B:I.419, A:P.370
- Salt bridges: A:R.43, A:R.324
ACO.8: 23 residues within 4Å:- Chain D: R.165, I.419
- Chain F: R.43, L.273, H.274, G.275, A.277, L.309, V.314, I.315, P.316, G.317, Y.318, G.319, H.320, A.321, K.366, A.367, K.368, N.373, D.375, F.397
- Ligands: OAA.7
20 PLIP interactions:17 interactions with chain F, 3 interactions with chain D- Hydrophobic interactions: F:H.274
- Hydrogen bonds: F:I.315, F:I.315, F:G.317, F:Y.318, F:Y.318, F:K.366, F:K.368, F:N.373, F:D.375
- Water bridges: F:R.43, F:R.43, F:H.320, F:R.324, F:N.369, D:R.22, D:I.419
- Salt bridges: F:R.43, F:K.366, D:R.165
- 1 x COA: COENZYME A(Non-covalent)
COA.5: 18 residues within 4Å:- Chain D: R.43, A.277, L.309, V.314, I.315, P.316, G.317, Y.318, G.319, H.320, A.321, L.361, K.366, A.367, K.368, N.373, D.375
- Ligands: OAA.4
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:I.315, D:G.317, D:Y.318, D:Y.318, D:Y.318, D:K.368, D:N.373
- Salt bridges: D:R.43, D:R.43
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, L. et al., TtCS, oxaloacetate, acetyl-CoA complex. To Be Published
- Release Date
- 2025-01-22
- Peptides
- Citrate synthase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-hexamer
- Ligands
- 5 x OAA: OXALOACETATE ION(Non-covalent)
- 2 x ACO: ACETYL COENZYME *A(Non-covalent)
- 1 x COA: COENZYME A(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, L. et al., TtCS, oxaloacetate, acetyl-CoA complex. To Be Published
- Release Date
- 2025-01-22
- Peptides
- Citrate synthase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F