SMTL ID : 8xz7.1 (1 other biounit)

FGFR1 kinase domain with a covalent inhibitor 10h

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Q.119, R.122, S.129, G.242, G.243, S.244 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.119, A:S.129, A:G.242, A:S.244 Water bridges: A:S.129 Salt bridges: A:R.122 SO4.2: 5 residues within 4Å: Chain A: C.33, R.172, N.173, T.202, R.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.172, A:N.173, A:T.202 Salt bridges: A:R.172 SO4.3: 5 residues within 4Å: Chain A: R.115, R.206, L.207, W.211, P.245 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.207 Salt bridges: A:R.115

1 x 01: 5-azanyl-3-[2-[4,6-bis(fluoranyl)-2-methyl-3~{H}-benzimidazol-5-yl]ethynyl]-1-[[3-(prop-2-enoylamino)phenyl]methyl]pyrazole-4-carboxamide

01.4: 24 residues within 4Å: Chain A: L.29, G.30, E.31, G.32, C.33, F.34, V.37, A.57, K.59, E.76, M.80, V.106, E.107, Y.108, A.109, N.113, E.116, L.175, A.185, D.186, F.187, G.188, T.203, N.204 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:E.31, A:F.34, A:V.37, A:K.59, A:V.106, A:V.106, A:N.113, A:F.187, A:N.204 Hydrogen bonds: A:E.31, A:C.33, A:E.76, A:E.76, A:E.107, A:A.109, A:A.109, A:D.186, A:D.186 Water bridges: A:N.113 pi-Stacking: A:F.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, W. et al., Design, synthesis and biological evaluation of 5-amino-1H-pyrazole-4-carboxamide derivatives as pan-FGFR covalent inhibitors. Eur.J.Med.Chem. (2024)

Release Date

2024-06-26

Peptides

Fibroblast growth factor receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fibroblast growth factor receptor 1

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