SMTL ID : 8y0v.1

HIF prolyl hydroxylase 2 in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 01: ~{tert}-butyl 4-[6-[(6-cyanopyridin-3-yl)methylcarbamoyl]-5-oxidanyl-1,7-naphthyridin-2-yl]piperazine-1-carboxylate

01.1: 15 residues within 4Å: Chain A: W.78, M.119, Y.123, Y.130, H.133, D.135, D.140, R.142, Y.149, H.194, V.196, R.203, A.205, W.209 Ligands: MN.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.196 Hydrogen bonds: A:N.151 pi-Stacking: A:Y.123, A:Y.130

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.133, D.135, H.194 Ligands: 01.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.133, A:D.135, A:H.194, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ding, X. et al., Intestinal mucosal barrier repair and immune regulation with an AI-developed gut-restricted PHD inhibitor. Nat.Biotechnol. (2024)

Release Date

2024-12-18

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 1

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