SMTL ID : 8y6h.1

P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in LMNG detergent

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

3 x R0Z: elacridar(Non-covalent)

R0Z.1: 16 residues within 4Å: Chain A: L.65, M.68, M.69, F.336, Q.725, F.728, F.732, E.875, Q.946, M.949, Y.950, Y.953, S.979, F.983, M.986 Ligands: R0Z.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.65, A:F.336, A:F.732, A:M.949, A:Y.950, A:F.983, A:F.983, A:F.983 Hydrogen bonds: A:Y.953 Salt bridges: A:E.875 pi-Stacking: A:F.983 R0Z.2: 20 residues within 4Å: Chain A: K.189, W.232, A.233, L.236, S.237, F.303, I.306, Y.307, Y.310, L.339, F.343, Q.347, P.350, F.728, M.876, L.879, S.880, F.994 Ligands: R0Z.1, R0Z.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.233, A:F.303, A:I.306, A:F.343, A:P.350, A:L.879, A:L.879 Hydrogen bonds: A:K.189 pi-Stacking: A:W.232, A:W.232 R0Z.3: 13 residues within 4Å: Chain A: W.232, L.236, F.239, I.299, F.770, Q.773, S.831, A.834, Q.838, Q.990, V.991, F.994 Ligands: R0Z.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.232, A:A.834, A:Q.990, A:F.994, A:F.994, A:F.994 Hydrogen bonds: A:Q.773, A:Q.838, A:Q.838 pi-Stacking: A:F.239, A:F.770, A:F.994

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hamaguchi-Suzuki, N. et al., Cryo-EM structure of P-glycoprotein bound to triple elacridar inhibitor molecules. Biochem.Biophys.Res.Commun. (2024)

Release Date

2024-04-17

Peptides

ATP-dependent translocase ABCB1,mNeonGreen: A
UIC2 Fab light chain: B
UIC2 Fab heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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ATP-dependent translocase ABCB1,mNeonGreen

UIC2 Fab light chain

UIC2 Fab heavy chain

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