SMTL ID : 8y90.1

Structure of NET-Nefopam in outward-open state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

1 x 01: (1S)-5-methyl-1-phenyl-1,3,4,6-tetrahydro-2,5-benzoxazocine

01.1: 11 residues within 4Å: Chain B: F.72, D.75, A.145, V.148, Y.151, F.317, S.318, L.319, G.320, F.323, G.423 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.148, B:F.323, B:F.323 Salt bridges: B:D.75

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain B: G.71, V.74, A.414, L.415, D.418, S.419 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.419, B:S.419

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain B: N.78, Y.98, Q.314, S.318, N.350, S.354 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Dimerization and antidepressant recognition at noradrenaline transporter. Nature (2024)

Release Date

2024-05-29

Peptides

Sodium-dependent noradrenaline transporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Sodium-dependent noradrenaline transporter

Related Entries With Identical Sequence