SMTL ID : 8y95.1

Structure of NET-NE in Occluded state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x E5E: Noradrenaline(Non-covalent)

E5E.1: 11 residues within 4Å: Chain A: F.72, D.75, A.77, A.145, V.148, G.149, Y.152, F.317, F.323, S.419, S.420 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.145, A:V.148, A:V.148, A:Y.152, A:F.323 Hydrogen bonds: A:D.75, A:Y.152, A:S.419, A:S.420 E5E.4: 10 residues within 4Å: Chain B: F.72, D.75, A.77, A.145, V.148, G.149, Y.152, F.317, S.419, S.420 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.148, B:V.148, B:Y.152 Hydrogen bonds: B:D.75, B:Y.152, B:S.419, B:S.420

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: N.78, Y.98, Q.314, S.318 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: N.78, Y.98, Q.314, S.318 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: A.73, N.78, S.318, N.350 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.75, A:S.318 NA.6: 7 residues within 4Å: Chain B: F.72, A.73, D.75, A.77, N.78, S.318, N.350 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.73, B:N.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Dimerization and antidepressant recognition at noradrenaline transporter. Nature (2024)

Release Date

2024-05-29

Peptides

Sodium-dependent noradrenaline transporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent noradrenaline transporter

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