SMTL ID : 8yhu.1

hTLR3/minibinder 8.6

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: E.7, N.26 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: L.217, A.220, N.221, W.247 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 1 residues within 4Å: Chain A: N.239 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain A: N.372, E.373 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 6 residues within 4Å: Chain A: E.337, S.361, N.387, T.389, D.411 Chain B: R.29 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain A: N.31, T.33 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain A: P.73, M.74, K.76, N.98 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.98 NAG.8: 3 residues within 4Å: Chain A: K.175, N.226, M.252 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.175, A:N.226 NAG.9: 5 residues within 4Å: Chain A: T.222, R.225, W.247, T.248, N.249 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.225 NAG.10: 3 residues within 4Å: Chain A: N.265, F.288, H.290 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.265, A:H.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H. et al., De novo design of TLR3 binders. To Be Published

Release Date

2025-02-05

Peptides

Toll-like receptor 3: A
minibinder 8.6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Toll-like receptor 3

minibinder 8.6

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