SMTL ID : 8ykh.1

Structure of SARS-CoV-2 spike RBD in complex with NT-108 scFv

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain B: F.327, G.328, N.332, S.360, S.362 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anraku, Y. et al., Structural basis for potent neutralization activity of SARS-CoV-2 antibody, NT-108. To Be Published

Release Date

2025-03-12

Peptides

NT-108 scFv: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NT-108 scFv

Spike glycoprotein

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