SMTL ID : 8yme.1

BRD4-BD1 in complex with N-cyclohexyl-1-methyl-6-{[5-methyl-7-(1-methylpyrazol-3-yl)-4-oxo-pyrazolo[4,3-c]pyridin-2-yl]methyl}azepan-1-ium-4-carboxamide 2,2,2-trifluoroacetate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x 01: (4R,6S)-N-cyclohexyl-1-methyl-6-[[5-methyl-7-(1-methylpyrazol-3-yl)-4-oxidanylidene-pyrazolo[4,3-c]pyridin-2-yl]methyl]azepane-4-carboxamide

01.1: 16 residues within 4Å: Chain A: W.41, P.42, F.43, Q.45, V.47, L.52, L.54, Y.57, C.96, Y.99, N.100, K.101, D.104, D.105, I.106, M.109 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.41, A:P.42, A:L.52, A:D.104, A:I.106 Hydrogen bonds: A:N.100, A:D.105, A:I.106 Water bridges: A:Q.45 Salt bridges: A:D.104

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: I.60, I.61, K.62, T.63, N.95, I.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.60, A:K.62, A:T.63 EDO.3: 8 residues within 4Å: Chain A: S.11, N.12, P.13, K.15, K.17, N.76, N.77, Y.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.12, A:K.15, A:K.17

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: K.17 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.17, A:N.77 Salt bridges: A:K.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hagihara, S. et al., Discovery of a potent, orally available pyrazolopyridone derivative as a novel selective BET BD1 Inhibitor (Part 2). To Be Published

Release Date

2025-03-12

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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