SMTL ID : 8ymi.1

BRD4-BD1 in complex with 2-{[(3S)-1-benzylpyrrolidin-3-yl]methyl}-5-methyl-7-(1-methylpyrazol-3-yl)pyrazolo[4,3-c]pyridin-4-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.01 Å

Oligo State

monomer

Ligands

1 x 01: 2-{[(3S)-1-benzylpyrrolidin-3-yl]methyl}-5-methyl-7-(1-methylpyrazol-3-yl)pyrazolo[4,3-c]pyridin-4-one

01.1: 14 residues within 4Å: Chain A: W.41, P.42, F.43, Q.45, V.47, L.52, L.54, Y.57, C.96, Y.99, N.100, D.105, I.106, M.109 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.41, A:L.52, A:I.106 Hydrogen bonds: A:N.100 Water bridges: A:Q.45

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: E.9, T.10, S.11, N.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.10, A:S.11, A:S.11 EDO.3: 3 residues within 4Å: Chain A: K.72, E.75, N.76 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.76, A:N.76 Water bridges: A:E.75, A:N.76 EDO.4: 6 residues within 4Å: Chain A: I.60, I.61, K.62, T.63, N.95, I.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.60, A:K.62, A:T.63, A:N.95 EDO.5: 7 residues within 4Å: Chain A: T.10, S.11, N.12, K.17, N.76, N.77, Y.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.12 Water bridges: A:K.15, A:Y.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hagihara, S. et al., Discovery of a potent, orally available pyrazolopyridone derivative as a novel selective BET BD1 Inhibitor (Part 2). To Be Published

Release Date

2025-03-12

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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