SMTL ID : 8ytf.1

Crystal structures of human IRF2BP2 RING domain in complex with VGLL4 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x ARG- PRO- SER- VAL- ILE- THR: Transcription cofactor vestigial-like protein 4(Non-covalent)

ARG-PRO-SER-VAL-ILE-THR.1: 15 residues within 4Å: Chain A: T.21, H.22, F.23, V.24, Q.25, P.27, F.36, L.62, W.69, A.70, F.71, M.72, E.75, T.78, I.79 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.23, A:V.24, A:Q.25, A:P.27, A:F.36, A:L.62, A:W.69, A:E.75, A:T.78, A:I.79 Hydrogen bonds: A:F.23, A:F.23, A:Q.25, A:A.70, A:M.72, A:E.75 Salt bridges: A:E.75

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.11, C.14, C.35, C.38 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:C.35, A:C.38 ZN.3: 5 residues within 4Å: Chain A: C.26, H.32, C.54, S.56, C.60 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:H.32, A:C.54, A:C.60 ZN.4: 1 residues within 4Å: Chain A: S.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.2, H2O.2, H2O.2, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, G. et al., IRF2BP2 binds to a conserved RxSVI motif of protein partners and regulates megakaryocytic differentiation. Nat Commun (2024)

Release Date

2024-11-20

Peptides

Interferon regulatory factor 2-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interferon regulatory factor 2-binding protein 2

Related Entries With Identical Sequence