SMTL ID : 8yth.1

Crystal structures of human IRF2BP2 RING domain in complex with ZBTB16 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ARG- SER- SER- VAL- ILE- THR- SER: Zinc finger and BTB domain-containing protein 16(Non-covalent)

ARG-SER-SER-VAL-ILE-THR-SER.1: 12 residues within 4Å: Chain A: T.21, H.22, F.23, V.24, Q.25, P.27, F.36, L.62, W.69, A.70, E.75, T.78 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.24, A:P.27, A:T.78 Hydrogen bonds: A:F.23, A:F.23, A:F.23, A:Q.25, A:A.70, A:E.75 Salt bridges: A:E.75

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.11, C.14, C.35, C.38 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:C.35, A:C.38 ZN.3: 4 residues within 4Å: Chain A: C.26, H.32, C.54, C.60 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:H.32, A:C.54, A:C.60 ZN.4: 3 residues within 4Å: Chain A: C.10, C.11, H.15 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.10, A:H.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, G. et al., IRF2BP2 binds to a conserved RxSVI motif of protein partners and regulates megakaryocytic differentiation. Nat Commun (2024)

Release Date

2024-11-20

Peptides

Interferon regulatory factor 2-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interferon regulatory factor 2-binding protein 2

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