SMTL ID : 8z0z.1

Cryo-EM structure of the panda P2X7 receptor in complex with JNJ-54175446

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: S.164, E.166, N.167 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.166, A:E.166 NAG.2: 1 residues within 4Å: Chain A: N.193 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain B: S.164, E.166, N.167 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.166, B:E.166 NAG.5: 1 residues within 4Å: Chain B: N.193 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain C: S.164, E.166, N.167 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.166, C:E.166 NAG.8: 1 residues within 4Å: Chain C: N.193 No protein-ligand interaction detected (PLIP)

3 x 01: [2-chloranyl-3-(trifluoromethyl)phenyl]-[(4~{R})-1-(5-fluoranylpyrimidin-2-yl)-4-methyl-6,7-dihydro-4~{H}-[1,2,3]triazolo[4,5-c]pyridin-5-yl]methanone

01.3: 15 residues within 4Å: Chain A: V.64, S.65, G.66, F.68, D.72, Y.73, T.74, F.75, F.83, K.90, Y.275, K.277 Chain C: Q.96, W.147, Y.278 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:K.90 pi-Stacking: A:F.68 Halogen bonds: A:K.90 Hydrophobic interactions: C:W.147, C:Y.278 01.6: 15 residues within 4Å: Chain A: W.147, Y.278, E.285 Chain B: V.64, S.65, G.66, F.68, D.72, Y.73, T.74, F.75, F.83, K.90, Y.275, K.277 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.90 pi-Stacking: B:F.68 Halogen bonds: B:K.90 Hydrophobic interactions: A:W.147, A:Y.278 01.9: 16 residues within 4Å: Chain B: Q.96, W.147, Y.278 Chain C: V.64, S.65, G.66, F.68, D.72, Y.73, T.74, F.75, F.83, M.85, K.90, Y.275, K.277 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:K.90 pi-Stacking: C:F.68 Halogen bonds: C:K.90 Hydrophobic interactions: B:W.147, B:Y.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheng, D. et al., Cryo-EM structure of the panda P2X7 receptor in complex with JNJ-54175446. To Be Published

Release Date

2025-04-16

Peptides

P2X purinoceptor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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P2X purinoceptor

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