SMTL ID : 8z1d.1

Cryo-EM structure of the panda P2X7 receptor in complex with PSFL1191

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 4 residues within 4Å: Chain A: N.163, S.164, E.166, N.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.167 NAG.2: 3 residues within 4Å: Chain A: G.191, V.192, N.193 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.193 NAG.4: 4 residues within 4Å: Chain B: N.163, S.164, E.166, N.167 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.167 NAG.5: 4 residues within 4Å: Chain B: G.191, V.192, N.193, T.195 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.193 NAG.7: 4 residues within 4Å: Chain C: N.163, S.164, E.166, N.167 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.167 NAG.8: 3 residues within 4Å: Chain C: G.191, V.192, N.193 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.193

3 x 01: PSFL1191

01.3: 10 residues within 4Å: Chain A: D.72, T.74, F.75, M.85, F.88, F.273, Y.275, I.290, V.292 Chain C: Y.278 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.75, A:F.273, A:Y.275, A:I.290, A:V.292 Salt bridges: A:D.72 01.6: 11 residues within 4Å: Chain A: Y.278 Chain B: A.71, D.72, T.74, F.75, M.85, F.88, F.273, Y.275, I.290, V.292 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.75, B:F.273, B:Y.275, B:I.290, B:V.292 Hydrogen bonds: A:Y.278 01.9: 10 residues within 4Å: Chain B: Y.278 Chain C: F.68, D.72, T.74, F.75, M.85, F.273, Y.275, I.290, V.292 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.75, C:F.273, C:Y.275, C:I.290, C:V.292 Salt bridges: C:D.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheng, D. et al., Cryo-EM structure of the panda P2X7 receptor in complex with PSFL1191. To Be Published

Release Date

2025-04-16

Peptides

P2X purinoceptor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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P2X purinoceptor

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