SMTL ID : 8z33.2 (1 other biounit)

Crystal Structure of HIF-PHD2 in complex with compound 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.134, D.136, H.195 Ligands: 01.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, A:D.136, A:H.195, H2O.1

1 x F: FLUORIDE ION(Non-covalent)

F.2: 3 residues within 4Å: Chain A: K.221, G.227, E.228 No protein-ligand interaction detected (PLIP)

1 x 01: 2-[[6-[2-(4-fluorophenyl)ethyl]-2-methyl-5-oxidanyl-pyrimidin-4-yl]carbonylamino]ethanoic acid

01.3: 18 residues within 4Å: Chain A: D.75, I.77, W.79, M.120, A.122, Y.124, Y.131, H.134, D.136, R.143, I.148, Y.150, L.164, H.195, V.197, R.204, W.210 Ligands: FE2.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.77, A:W.79, A:A.122, A:W.210 Hydrogen bonds: A:Y.124 Salt bridges: A:R.204 pi-Stacking: A:Y.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fukuda, T. et al., Discovery of DS44470011: An oral hypoxia-inducible factor prolyl hydroxylase inhibitor for the treatment of renal anemia. Bioorg.Med.Chem.Lett. (2024)

Release Date

2025-02-26

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Egl nine homolog 1

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