SMTL ID : 8z7h.1

PRMT1-Decamer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

8 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: D.14, Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, I.76, E.77, C.78, S.79, G.103, K.104, V.105, E.121, M.132, T.135 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.121 Hydrogen bonds: A:R.31, A:G.57, A:T.58, A:E.77, A:C.78, A:S.79, A:V.105, A:E.106, A:E.121, A:T.135 Salt bridges: A:R.31 SAH.2: 20 residues within 4Å: Chain B: D.14, Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, I.76, E.77, C.78, S.79, G.103, K.104, V.105, E.121, M.132, T.135 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:E.121 Hydrogen bonds: B:R.31, B:G.57, B:T.58, B:C.78, B:S.79, B:V.105, B:E.106, B:E.121 Salt bridges: B:R.31 SAH.3: 20 residues within 4Å: Chain C: D.14, Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, I.76, E.77, C.78, S.79, G.103, K.104, V.105, E.121, M.132, T.135 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:E.121 Hydrogen bonds: C:R.31, C:G.57, C:T.58, C:E.77, C:C.78, C:S.79, C:V.105, C:E.106, C:E.121, C:T.135 Salt bridges: C:R.31 SAH.4: 20 residues within 4Å: Chain D: D.14, Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, I.76, E.77, C.78, S.79, G.103, K.104, V.105, E.121, M.132, T.135 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:E.121 Hydrogen bonds: D:R.31, D:G.57, D:T.58, D:C.78, D:S.79, D:V.105, D:E.106, D:E.121 Salt bridges: D:R.31 SAH.5: 20 residues within 4Å: Chain E: D.14, Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, I.76, E.77, C.78, S.79, G.103, K.104, V.105, E.121, M.132, T.135 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:E.121 Hydrogen bonds: E:R.31, E:G.57, E:T.58, E:C.78, E:S.79, E:V.105, E:E.106, E:E.121 Salt bridges: E:R.31 SAH.6: 20 residues within 4Å: Chain F: D.14, Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, I.76, E.77, C.78, S.79, G.103, K.104, V.105, E.121, M.132, T.135 12 PLIP interactions: 12 interactions with chain F Hydrophobic interactions: F:E.121 Hydrogen bonds: F:R.31, F:G.57, F:T.58, F:E.77, F:C.78, F:S.79, F:V.105, F:E.106, F:E.121, F:T.135 Salt bridges: F:R.31 SAH.7: 20 residues within 4Å: Chain G: D.14, Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, I.76, E.77, C.78, S.79, G.103, K.104, V.105, E.121, M.132, T.135 10 PLIP interactions: 10 interactions with chain G Hydrophobic interactions: G:E.121 Hydrogen bonds: G:R.31, G:G.57, G:T.58, G:C.78, G:S.79, G:V.105, G:E.106, G:E.121 Salt bridges: G:R.31 SAH.8: 20 residues within 4Å: Chain H: D.14, Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, I.76, E.77, C.78, S.79, G.103, K.104, V.105, E.121, M.132, T.135 12 PLIP interactions: 12 interactions with chain H Hydrophobic interactions: H:E.121 Hydrogen bonds: H:R.31, H:G.57, H:T.58, H:E.77, H:C.78, H:S.79, H:V.105, H:E.106, H:E.121, H:T.135 Salt bridges: H:R.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadendla, E.K. et al., PRMT1-Decamer. To Be Published

Release Date

2025-04-23

Peptides

Protein arginine N-methyltransferase 1: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Protein arginine N-methyltransferase 1

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