SMTL ID : 8z7o.1

PRMT1-Filament

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

24 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.22, A:G.55, A:S.56, A:C.78, A:S.79, A:V.105, A:E.106 Salt bridges: A:R.31 SAH.2: 19 residues within 4Å: Chain B: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:H.22, B:G.55, B:S.56, B:C.78, B:S.79, B:V.105, B:E.106, B:T.135 Salt bridges: B:R.31 SAH.3: 19 residues within 4Å: Chain C: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:H.22, C:G.55, C:S.56, C:C.78, C:S.79, C:V.105, C:E.106 Salt bridges: C:R.31 SAH.4: 19 residues within 4Å: Chain D: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:H.22, D:G.55, D:S.56, D:C.78, D:S.79, D:V.105, D:E.106, D:T.135 Salt bridges: D:R.31 SAH.5: 19 residues within 4Å: Chain E: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:H.22, E:G.55, E:S.56, E:C.78, E:S.79, E:V.105, E:E.106 Salt bridges: E:R.31 SAH.6: 19 residues within 4Å: Chain F: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:H.22, F:G.55, F:S.56, F:C.78, F:S.79, F:V.105, F:E.106, F:T.135 Salt bridges: F:R.31 SAH.7: 19 residues within 4Å: Chain G: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain G Hydrogen bonds: G:H.22, G:G.55, G:S.56, G:C.78, G:S.79, G:V.105, G:E.106 Salt bridges: G:R.31 SAH.8: 19 residues within 4Å: Chain H: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:H.22, H:G.55, H:S.56, H:C.78, H:S.79, H:V.105, H:E.106, H:T.135 Salt bridges: H:R.31 SAH.9: 19 residues within 4Å: Chain I: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain I Hydrogen bonds: I:H.22, I:G.55, I:S.56, I:C.78, I:S.79, I:V.105, I:E.106 Salt bridges: I:R.31 SAH.10: 19 residues within 4Å: Chain J: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain J Hydrogen bonds: J:H.22, J:G.55, J:S.56, J:C.78, J:S.79, J:V.105, J:E.106, J:T.135 Salt bridges: J:R.31 SAH.11: 19 residues within 4Å: Chain K: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain K Hydrogen bonds: K:H.22, K:G.55, K:S.56, K:C.78, K:S.79, K:V.105, K:E.106 Salt bridges: K:R.31 SAH.12: 19 residues within 4Å: Chain L: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain L Hydrogen bonds: L:H.22, L:G.55, L:S.56, L:C.78, L:S.79, L:V.105, L:E.106, L:T.135 Salt bridges: L:R.31 SAH.13: 19 residues within 4Å: Chain M: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain M Hydrogen bonds: M:H.22, M:G.55, M:S.56, M:C.78, M:S.79, M:V.105, M:E.106, M:T.135 Salt bridges: M:R.31 SAH.14: 19 residues within 4Å: Chain N: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain N Hydrogen bonds: N:H.22, N:G.55, N:S.56, N:C.78, N:S.79, N:V.105, N:E.106 Salt bridges: N:R.31 SAH.15: 19 residues within 4Å: Chain O: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain O Hydrogen bonds: O:H.22, O:G.55, O:S.56, O:C.78, O:S.79, O:V.105, O:E.106, O:T.135 Salt bridges: O:R.31 SAH.16: 19 residues within 4Å: Chain P: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain P Hydrogen bonds: P:H.22, P:G.55, P:S.56, P:C.78, P:S.79, P:V.105, P:E.106 Salt bridges: P:R.31 SAH.17: 19 residues within 4Å: Chain Q: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain Q Hydrogen bonds: Q:H.22, Q:G.55, Q:S.56, Q:C.78, Q:S.79, Q:V.105, Q:E.106, Q:T.135 Salt bridges: Q:R.31 SAH.18: 19 residues within 4Å: Chain R: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain R Hydrogen bonds: R:H.22, R:G.55, R:S.56, R:C.78, R:S.79, R:V.105, R:E.106 Salt bridges: R:R.31 SAH.19: 19 residues within 4Å: Chain S: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain S Hydrogen bonds: S:H.22, S:G.55, S:S.56, S:C.78, S:S.79, S:V.105, S:E.106 Salt bridges: S:R.31 SAH.20: 19 residues within 4Å: Chain T: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain T Hydrogen bonds: T:H.22, T:G.55, T:S.56, T:C.78, T:S.79, T:V.105, T:E.106, T:T.135 Salt bridges: T:R.31 SAH.21: 19 residues within 4Å: Chain U: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain U Hydrogen bonds: U:H.22, U:G.55, U:S.56, U:C.78, U:S.79, U:V.105, U:E.106 Salt bridges: U:R.31 SAH.22: 19 residues within 4Å: Chain V: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain V Hydrogen bonds: V:H.22, V:G.55, V:S.56, V:C.78, V:S.79, V:V.105, V:E.106, V:T.135 Salt bridges: V:R.31 SAH.23: 19 residues within 4Å: Chain W: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 8 PLIP interactions: 8 interactions with chain W Hydrogen bonds: W:H.22, W:G.55, W:S.56, W:C.78, W:S.79, W:V.105, W:E.106 Salt bridges: W:R.31 SAH.24: 19 residues within 4Å: Chain X: Y.16, H.22, M.25, R.31, G.55, S.56, G.57, T.58, I.60, L.61, I.76, E.77, C.78, S.79, K.104, V.105, E.106, E.121, T.135 9 PLIP interactions: 9 interactions with chain X Hydrogen bonds: X:H.22, X:G.55, X:S.56, X:C.78, X:S.79, X:V.105, X:E.106, X:T.135 Salt bridges: X:R.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadendla, E.K. et al., PRMT1-Filament. To Be Published

Release Date

2025-04-23

Peptides

Protein arginine N-methyltransferase 1: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Protein arginine N-methyltransferase 1

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