SMTL ID : 8zv6.1

Structure of D440Y-hPCC BCCP-CT Conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x BTN: BIOTIN(Covalent)

BTN.1: 6 residues within 4Å: Chain A: M.693, K.694 Chain B: F.105 Chain C: G.202, I.225, T.226 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.225

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 20 residues within 4Å: Chain A: M.217, K.219, G.224, G.225, G.226, M.229, E.261, K.262, F.263, I.264, H.269, Q.293, N.296, E.336, L.338, L.348, E.349, T.501 Ligands: MG.3, BCT.4 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.219, A:G.225, A:G.226, A:K.262, A:I.264, A:H.269, A:Q.293 Salt bridges: A:K.219, A:K.298 pi-Stacking: A:F.263

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: E.336, E.349 Ligands: ATP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.349

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.4: 7 residues within 4Å: Chain A: K.298, R.353, Q.355, V.356, E.357, R.399 Ligands: ATP.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.298, A:Q.355, A:R.399

1 x 1VU: propionyl Coenzyme A(Non-covalent)

1VU.5: 15 residues within 4Å: Chain B: M.171, G.175, I.179 Chain C: R.54, F.126, F.129, G.130, S.132, G.162, G.163, A.164, P.199, A.201, V.230, Q.241 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:P.199, C:A.201 Hydrogen bonds: C:S.132, C:G.162, C:A.164, C:A.164 Salt bridges: C:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, H. et al., Nanoscale conformational dynamics of human propionyl-CoA carboxylase. Structure (2025)

Release Date

2025-11-19

Peptides

Propionyl-CoA carboxylase alpha chain, mitochondrial: A
Propionyl-CoA carboxylase beta chain, mitochondrial: B
Propionyl-CoA carboxylase beta chain, mitochondrial: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

Propionyl-CoA carboxylase alpha chain, mitochondrial

Propionyl-CoA carboxylase beta chain, mitochondrial

Propionyl-CoA carboxylase beta chain, mitochondrial

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