SMTL ID : 8zvw.1

human citrate synthase complexed with oxaloacetate and coenzyme A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

2 x OAA: OXALOACETATE ION(Non-covalent)

OAA.1: 9 residues within 4Å: Chain A: H.236, N.240, H.272, H.318, R.327, F.395, R.399 Chain B: R.419 Ligands: COA.2 9 PLIP interactions: 1 interactions with chain B, 8 interactions with chain A Salt bridges: B:R.419, A:H.236, A:H.236, A:H.272, A:H.318, A:R.327, A:R.399 Water bridges: A:R.327, A:R.327 OAA.3: 9 residues within 4Å: Chain A: R.419 Chain B: H.236, N.240, H.272, H.318, R.327, F.395, R.399 Ligands: COA.4 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.272 Water bridges: B:R.327, B:R.327 Salt bridges: B:H.236, B:H.236, B:H.272, B:H.318, B:R.327, B:R.399, A:R.419

2 x COA: COENZYME A(Non-covalent)

COA.2: 19 residues within 4Å: Chain A: L.271, A.275, L.307, V.312, V.313, P.314, G.315, Y.316, G.317, H.318, A.319, L.359, Q.362, K.364, A.365, K.366, N.371, D.373 Ligands: OAA.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.313, A:G.315, A:Y.316, A:Y.316, A:Y.316, A:Q.362, A:A.365, A:N.371 COA.4: 19 residues within 4Å: Chain B: L.271, A.275, L.307, V.312, V.313, P.314, G.315, Y.316, G.317, H.318, A.319, L.359, Q.362, K.364, A.365, K.366, N.371, D.373 Ligands: OAA.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:V.313, B:G.315, B:Y.316, B:Y.316, B:Y.316, B:Q.362, B:A.365, B:N.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, L.Y. et al., human citrate synthase complexed with oxaloacetate and coenzyme A. To Be Published

Release Date

2025-06-18

Peptides

Citrate synthase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Citrate synthase, mitochondrial

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