SMTL ID : 8zy9.1

Ra9479 Bat ACE2 Dimer in Complex with Two BtKY72 Sarbecovirus Spike RBDs.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain B: N.53, D.56, E.57, N.58, R.340 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.57 NAG-NAG.2: 5 residues within 4Å: Chain B: N.159, H.255, N.689, S.691, D.692 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain B: H.417, T.420, S.545, N.546 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.420 NAG-NAG.4: 5 residues within 4Å: Chain D: N.53, D.56, E.57, N.58, R.340 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain D: N.159, H.255, N.689, S.691, D.692 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain D: H.417, T.420, S.545, N.546 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain B: N.322 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.322 NAG.8: 4 residues within 4Å: Chain B: F.285, N.432, I.436, W.594 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.285, B:I.436 Hydrogen bonds: B:N.432 NAG.9: 1 residues within 4Å: Chain D: N.322 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.322 NAG.10: 4 residues within 4Å: Chain D: F.285, N.432, I.436, W.594 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:F.285, D:I.436 Hydrogen bonds: D:N.432

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., The complex between sarbecovirus BtKY72-RBD and bACE2-Ra9479. To Be Published

Release Date

2025-02-05

Peptides

Spike glycoprotein: AC
Angiotensin-converting enzyme: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
D

D
C

Spike glycoprotein

Angiotensin-converting enzyme

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