SMTL ID : 8zya.1

Ra9479 Bat ACE2 Bound to BtkY72 Sarbecovirus Spike RBD (Focused Refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain B: E.49, N.53, S.55, E.57, N.58, R.340 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: N.159, H.255, N.689, S.691, D.692 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.255 NAG-NAG.3: 4 residues within 4Å: Chain B: H.417, T.420, S.545, N.546 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain B: N.322 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.322 NAG.5: 4 residues within 4Å: Chain B: F.285, N.432, I.436, W.594 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.285, B:I.436 Hydrogen bonds: B:N.432

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., The complex between sarbecovirus BtKY72-RBD and bACE2-Ra9479. To Be Published

Release Date

2025-02-05

Peptides

Spike glycoprotein: A
Angiotensin-converting enzyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Spike glycoprotein

Angiotensin-converting enzyme

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