SMTL ID : 9b0b.1 (1 other biounit)

Structure of Optineurin bound to HOIP NZF1 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-2-1-mer

Ligands

5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 2 residues within 4Å: Chain A: E.40, T.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.40, A:T.44 PGE.2: 4 residues within 4Å: Chain B: D.58, A.61, E.62, A.65 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.62 PGE.4: 4 residues within 4Å: Chain B: S.23, L.26, Q.27, E.30 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.30 PGE.5: 4 residues within 4Å: Chain A: E.18 Chain B: K.13, L.16, A.17 No protein-ligand interaction detected (PLIP) PGE.7: 9 residues within 4Å: Chain A: E.9, L.10, K.13 Chain B: L.14, E.18 Chain C: R.2, A.16, A.17, R.28 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: A:E.9 Hydrogen bonds: A:K.13, C:R.2, C:R.28 Water bridges: B:E.18, B:E.18

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain B: K.19, A.22, S.23 Chain C: L.29 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.19

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain C: C.7, C.10, C.21, C.24 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.7, C:C.10, C:C.21, C:C.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michel, M.A. et al., Linkage and substrate specificity conferred by NZF ubiquitin binding domains. To Be Published

Release Date

2024-07-31

Peptides

Optineurin: AB
E3 ubiquitin-protein ligase RNF31: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

Optineurin

E3 ubiquitin-protein ligase RNF31

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