SMTL ID : 9b0b.2 (1 other biounit)

Structure of Optineurin bound to HOIP NZF1 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-2-1-mer

Ligands

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 3 residues within 4Å: Chain A: Q.25, M.28, K.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.25, A:K.32

5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 4 residues within 4Å: Chain A: R.63, R.66, E.67, H.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.66 PGE.3: 5 residues within 4Å: Chain A: L.14, E.18 Chain B: K.13, L.16, A.17 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.13, A:E.18 PGE.4: 4 residues within 4Å: Chain A: M.31 Chain B: K.32, I.35, A.36 No protein-ligand interaction detected (PLIP) PGE.5: 3 residues within 4Å: Chain B: K.19, S.23 Chain C: L.29 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.19 PGE.7: 8 residues within 4Å: Chain A: E.9, L.10, K.13 Chain B: L.14, E.18 Chain C: R.2, A.16, A.17 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Water bridges: B:E.18 Hydrogen bonds: C:R.2, A:K.13

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain C: C.7, C.10, C.21, C.24 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.7, C:C.10, C:C.21, C:C.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michel, M.A. et al., Linkage and substrate specificity conferred by NZF ubiquitin binding domains. To Be Published

Release Date

2024-07-31

Peptides

Optineurin: AB
E3 ubiquitin-protein ligase RNF31: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

Optineurin

E3 ubiquitin-protein ligase RNF31

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