SMTL ID : 9bcn.1

Extracellular domain of apo GC-A, state 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 6 residues within 4Å: Chain A: N.24, Y.27, G.69, V.70, P.169, G.170 No protein-ligand interaction detected (PLIP) NAG-NAG-MAN.2: 5 residues within 4Å: Chain A: Y.374, D.386, N.406, T.408, S.409 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.374 NAG-NAG-MAN.3: 7 residues within 4Å: Chain B: N.24, S.26, Y.27, G.69, V.70, P.169, G.170 No protein-ligand interaction detected (PLIP) NAG-NAG-MAN.4: 5 residues within 4Å: Chain B: Y.374, D.386, N.406, T.408, S.409 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.374

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: P.21, S.64, P.95, G.96, C.97 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: P.21, S.64, P.95, G.96, C.97 Ligand excluded by PLIP

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain A: N.365, S.379 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.365 NAG.8: 2 residues within 4Å: Chain B: N.365, S.379 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.365

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Architecture and activation of single-pass transmembrane receptor guanylyl cyclase. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-11-27

Peptides

Atrial natriuretic peptide receptor 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Atrial natriuretic peptide receptor 1

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