SMTL ID : 9bcq.1

Extracellular domain of GC-A bound to ANP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: N.24, S.26, Y.27, L.68, G.69, V.70, R.168, G.170 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 8 residues within 4Å: Chain A: K.294, S.367, Q.369, Y.374, D.386, N.406, T.408, S.409 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.374 NAG-NAG.3: 7 residues within 4Å: Chain B: N.24, S.26, Y.27, L.68, G.69, V.70, G.170 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.4: 7 residues within 4Å: Chain B: K.294, D.297, Y.374, D.386, N.406, T.408, S.409 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.374

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 9 residues within 4Å: Chain A: L.20, P.21, W.29, S.64, C.71, P.95, G.96, C.97, A.100 Ligand excluded by PLIP CL.6: 8 residues within 4Å: Chain B: L.20, P.21, W.29, S.64, C.71, P.95, G.96, C.97 Ligand excluded by PLIP

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 2 residues within 4Å: Chain B: N.365, S.379 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.379

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Architecture and activation of single-pass transmembrane receptor guanylyl cyclase. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-11-27

Peptides

Atrial natriuretic peptide receptor 1: AB
Atrial natriuretic peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Atrial natriuretic peptide receptor 1

Atrial natriuretic peptide

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