SMTL ID : 9bfd.1

Tyrocidine synthetase modules 1 and 2 crosslinked in the condensation state, complex A

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x 01: (7S,10aR)-1-methyl-4-{4-[(5R)-1,1,5-trihydroxy-4,4-dimethyl-1,6,11-trioxo-2-oxa-7,10-diaza-1lambda~5~-phosphadodecan-12-yl]phenyl}-3,5,6,7,8,9,10,10a-octahydrocycloocta[d]pyridazin-7-yl [2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]carbamate

01.1: 33 residues within 4Å: Chain A: S.563, I.564 Chain B: M.18, G.21, M.22, F.24, H.25, V.37, H.147, W.153, S.255, S.279, V.280, V.281, S.282, I.299, T.301, L.336, Y.337, Q.340, Q.347, L.353, V.355, I.356, E.357, N.358, M.383, E.385, Y.389, M.394, H.1006, S.1007, L.1008 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:F.24, B:V.280, B:V.281, B:L.336, B:L.353, B:V.355, B:E.385 Hydrogen bonds: B:G.21, B:H.25, B:H.147, B:S.255, B:S.282, B:Q.340, B:Q.347, B:I.356, B:N.358, B:N.358, B:S.1007, B:L.1008

1 x PR8: 5'-O-[(R)-hydroxy{[(2S)-pyrrolidin-2-ylcarbonyl]oxy}phosphoryl]adenosine(Non-covalent)

PR8.2: 17 residues within 4Å: Chain B: F.659, D.660, A.732, G.733, E.734, Q.735, N.755, H.756, Y.757, G.758, P.759, S.760, D.847, F.859, R.862, N.949, K.951 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.659, B:F.659, B:N.949 Hydrogen bonds: B:G.733, B:E.734, B:N.755, B:S.760, B:D.847, B:R.862 Salt bridges: B:K.951, B:K.951 pi-Stacking: B:Y.757, B:Y.757, B:F.859

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heberlig, G.W. et al., Crosslinking Reveals the Molecular Details of Intermodular Condensation and Epimerization in Nonribosomal Peptide Biosynthesis. To Be Published

Release Date

2024-10-09

Peptides

Tyrocidine synthase 1: A
Tyrocidine synthase 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrocidine synthase 1

Tyrocidine synthase 2

Related Entries With Identical Sequence