SMTL ID : 9brw.1 (3 other biounits)

SARS-CoV-2 Papain-like Protease (PLpro) with Fragment 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 01: N-(2-chlorophenyl)-1-methyl-1H-pyrazolo[3,4-d]pyrimidin-4-amine

01.1: 9 residues within 4Å: Chain A: L.164, G.165, D.166, P.249, P.250, Y.266, N.269, Y.270, Y.275 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.164, A:D.166, A:Y.266, A:Y.270, A:Y.275 Hydrogen bonds: A:D.166 Water bridges: A:R.168, A:R.168 pi-Stacking: A:Y.270

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.191, C.194, C.226, C.228 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.191, A:C.194, A:C.226, A:C.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, A.J. et al., Fragment-Based Screen of SARS-CoV-2 Papain-like Protease (PL pro ). Acs Med.Chem.Lett. (2024)

Release Date

2024-07-31

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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