SMTL ID : 9brw.2 (3 other biounits)

SARS-CoV-2 Papain-like Protease (PLpro) with Fragment 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 01: N-(2-chlorophenyl)-1-methyl-1H-pyrazolo[3,4-d]pyrimidin-4-amine

01.1: 10 residues within 4Å: Chain A: L.164, G.165, D.166, P.249, P.250, Y.266, N.269, Y.270, Y.275, T.303 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.164, A:D.166, A:Y.266, A:Y.270, A:Y.275 Hydrogen bonds: A:D.166 pi-Stacking: A:Y.270 Halogen bonds: A:T.303

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.191, C.194, C.226, C.228, K.230 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.226, A:C.228

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: S.280, K.308 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: E.126 Ligand excluded by PLIP CL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: Y.139 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, A.J. et al., Fragment-Based Screen of SARS-CoV-2 Papain-like Protease (PL pro ). Acs Med.Chem.Lett. (2024)

Release Date

2024-07-31

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Papain-like protease nsp3

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