SMTL ID : 9bv6.1

Crystal structure of human CYP3A4 in complex with SJ000388260

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: R.84, I.97, S.98, W.105, R.109, F.116, I.280, F.281, A.284, G.285, T.288, V.292, I.348, A.349, L.352, R.354, P.413, F.414, G.415, S.416, R.419, N.420, C.421, I.422, A.427, M.431 Ligands: 01.2, PG0.3 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:I.97, A:F.116, A:I.280, A:F.281, A:A.284, A:V.292, A:I.348, A:A.349, A:L.352, A:F.414, A:F.414, A:I.422 Hydrogen bonds: A:S.416 Salt bridges: A:R.84, A:R.84, A:R.109, A:R.354, A:R.419 Metal complexes: A:C.421

1 x 01: 5-(4-methoxyphenyl)-1-[4-(2-methyl-1,3-thiazol-4-yl)phenyl]-1H-1,2,3-triazole

01.2: 13 residues within 4Å: Chain A: F.87, M.93, A.96, S.98, I.99, F.220, I.280, F.283, A.284, E.287, T.288 Ligands: HEM.1, PG0.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.96, A:I.99, A:F.220, A:F.283, A:F.283, A:T.288 Hydrogen bonds: A:S.98 pi-Stacking: A:F.283

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.3: 5 residues within 4Å: Chain A: R.84, S.98, I.99 Ligands: HEM.1, 01.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Decoding the selective chemical modulation of CYP3A4. Nat Commun (2025)

Release Date

2025-04-16

Peptides

Cytochrome P450 3A4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 3A4

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