SMTL ID : 9ms1.1

Crystal structure of human CYP3A4 in complex with SJYHJ-111

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: R.84, I.97, S.98, W.105, R.109, F.281, A.284, G.285, T.288, V.292, I.348, A.349, L.352, R.354, P.413, F.414, G.415, R.419, N.420, C.421, I.422, G.423, A.427, M.431 Ligands: 01.2 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:I.97, A:F.281, A:F.281, A:A.284, A:T.288, A:V.292, A:I.348, A:A.349, A:F.414, A:F.414, A:F.414, A:I.422 Salt bridges: A:R.84, A:R.84, A:R.109, A:R.354, A:R.419 Metal complexes: A:C.421

1 x 01: N'-(2-chlorophenyl)-N-[(3-hydroxyphenyl)methyl]-N-[(2P)-2-(1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]urea

01.2: 11 residues within 4Å: Chain A: R.84, F.87, S.98, F.220, I.280, F.283, A.284, T.288, A.349, R.351 Ligands: HEM.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.283, A:F.283, A:A.284, A:A.349 Hydrogen bonds: A:R.84, A:S.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Decoding the selective chemical modulation of CYP3A4. Nat Commun (2025)

Release Date

2025-04-16

Peptides

Cytochrome P450 3A4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 3A4

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