SMTL ID : 9c0b.1

E.coli GroEL + PBZ1587 inhibitor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-14-mer

Ligands

7 x 01: N-(2-{4-[4-(aminomethyl)benzene-1-sulfonamido]phenyl}-1,3-benzoxazol-5-yl)-5-chlorothiophene-2-sulfonamide

01.1: 17 residues within 4Å: Chain A: E.102, A.109, G.110, M.111, D.435, V.438, K.441, V.442, R.445 Chain B: E.102, A.106, A.109, G.110, M.111, D.435, V.442, R.445 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:A.109, A:V.438, B:A.109 Hydrogen bonds: A:E.102, A:E.102, B:D.435, B:R.445 pi-Cation interactions: A:R.445, B:R.445 Halogen bonds: A:D.435 01.2: 16 residues within 4Å: Chain C: E.102, A.109, G.110, M.111, D.435, K.441, V.442, R.445 Chain D: E.102, A.109, G.110, M.111, D.435, V.438, V.442, R.445 10 PLIP interactions: 5 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:A.109, D:A.109, D:V.438 Hydrogen bonds: C:E.102, C:E.102, C:R.445, D:D.435, D:R.445 pi-Cation interactions: C:R.445, D:R.445 01.3: 16 residues within 4Å: Chain E: E.102, A.109, M.111, D.435, V.438, K.441, V.442, R.445 Chain F: E.102, A.106, A.109, G.110, M.111, D.435, V.442, R.445 9 PLIP interactions: 5 interactions with chain E, 4 interactions with chain F Hydrophobic interactions: E:A.109, E:V.438, F:A.109 Hydrogen bonds: E:E.102, E:E.102, F:D.435, F:R.445 pi-Cation interactions: E:R.445, F:R.445 01.4: 16 residues within 4Å: Chain G: E.102, A.109, G.110, M.111, D.435, K.441, V.442, R.445 Chain H: E.102, A.109, G.110, M.111, D.435, V.438, V.442, R.445 9 PLIP interactions: 4 interactions with chain G, 5 interactions with chain H Hydrophobic interactions: G:A.109, H:A.109, H:V.438 Hydrogen bonds: G:E.102, G:E.102, H:D.435, H:R.445 pi-Cation interactions: G:R.445, H:R.445 01.5: 18 residues within 4Å: Chain I: E.102, A.109, G.110, M.111, D.435, K.441, V.442, R.445 Chain J: E.102, A.106, A.109, G.110, M.111, E.434, D.435, V.438, V.442, R.445 10 PLIP interactions: 5 interactions with chain I, 5 interactions with chain J Hydrophobic interactions: I:A.109, J:A.109, J:V.438 Hydrogen bonds: I:E.102, I:E.102, J:D.435, J:R.445 pi-Cation interactions: I:R.445, J:R.445 Halogen bonds: I:D.435 01.6: 18 residues within 4Å: Chain K: E.102, A.109, G.110, M.111, D.435, V.438, K.441, V.442, R.445 Chain L: E.102, A.106, A.109, G.110, M.111, D.435, V.438, V.442, R.445 10 PLIP interactions: 4 interactions with chain L, 6 interactions with chain K Hydrophobic interactions: L:A.109, L:V.438, K:A.109, K:V.438 Hydrogen bonds: L:D.435, K:E.102, K:E.102, K:R.445 pi-Cation interactions: L:R.445, K:R.445 01.7: 16 residues within 4Å: Chain M: E.102, A.109, G.110, M.111, D.435, K.441, V.442, R.445 Chain N: E.102, A.106, A.109, G.110, M.111, D.435, V.442, R.445 9 PLIP interactions: 5 interactions with chain M, 4 interactions with chain N Hydrophobic interactions: M:A.109, N:A.109 Hydrogen bonds: M:E.102, M:E.102, N:D.435, N:R.445 pi-Cation interactions: M:R.445, N:R.445 Halogen bonds: M:D.435

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godek, J. et al., Bis-sulfonamido-2-phenylbenzoxazoles Validate the GroES/EL Chaperone System as a Viable Antibiotic Target. J.Am.Chem.Soc. (2024)

Release Date

2024-08-07

Peptides

60 kDa chaperonin: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
O

C
I

D
P

E
J

F
Q

G
K

H
R

I
L

J
S

K
M

L
T

M
N

N
U

60 kDa chaperonin

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