SMTL ID : 9c10.1

AMG 193, a clinical stage MTA-cooperative PRMT5 inhibitor, drives anti-tumor activity preclinically and in patients with MTAP-deleted cancers

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.113, R.114, E.117, R.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.113, A:R.149 GOL.2: 4 residues within 4Å: Chain A: F.53, T.93, W.165, Q.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.28, A:S.28, A:Q.276

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: G.316, Y.317, Y.320 2 PLIP interactions: 2 interactions with chain A pi-Cation interactions: A:Y.317, A:Y.320

1 x 01: (4-amino-1,3-dihydrofuro[3,4-c][1,7]naphthyridin-8-yl){(3S)-3-[4-(trifluoromethyl)phenyl]morpholin-4-yl}methanone

01.4: 17 residues within 4Å: Chain A: F.313, A.314, Y.317, Q.322, L.325, F.340, K.346, E.448, L.449, L.450, E.457, V.516, F.590, S.591, W.592, F.593 Ligands: MTA.5 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.340, A:F.340, A:W.592 Hydrogen bonds: A:Q.322, A:K.346, A:E.457, A:F.593 pi-Stacking: A:Y.317, A:W.592, A:F.593

1 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)

MTA.5: 16 residues within 4Å: Chain A: P.327, L.328, Y.337, F.340, G.378, G.380, E.405, K.406, S.431, D.432, M.433, R.434, E.448, L.449, C.462 Ligands: 01.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.327, A:Y.337, A:K.406, A:D.432, A:M.433 pi-Cation interactions: A:K.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Belmontes, B. et al., AMG 193, a Clinical Stage MTA-Cooperative PRMT5 Inhibitor, Drives Antitumor Activity Preclinically and in Patients With MTAP-Deleted Cancers. Cancer Discov (2024)

Release Date

2024-10-02

Peptides

Protein arginine N-methyltransferase 5: A
Methylosome protein 50: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 5

Methylosome protein 50

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