SMTL ID : 9c16.1

Human biliverdin IX beta reductase in complex with NADP and BCT002029

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x 01: (3M)-3-[(8R)-3-ethyl-7-oxo-2-phenyl-4,7-dihydropyrazolo[1,5-a]pyrimidin-5-yl]benzoic acid

01.1: 15 residues within 4Å: Chain A: T.81, R.82, N.83, D.84, L.85, S.115, A.116, F.117, W.120, V.132, P.155, P.156, H.157, R.178 Ligands: NAP.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.85, A:A.116, A:W.120, A:V.132, A:V.132, A:P.156 Water bridges: A:Y.204 Salt bridges: A:R.178 pi-Stacking: A:F.117

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 25 residues within 4Å: Chain A: G.14, T.16, G.17, Q.18, T.19, R.39, R.43, D.58, V.59, L.78, L.79, G.80, T.81, R.82, V.90, M.91, C.113, T.114, S.115, H.136, P.155, P.156, H.157, I.158 Ligands: 01.1 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:I.158 Hydrogen bonds: A:G.14, A:T.16, A:G.17, A:Q.18, A:Q.18, A:T.19, A:T.19, A:R.39, A:D.58, A:V.59, A:L.79, A:G.80, A:R.82, A:I.158 Water bridges: A:T.16, A:T.16, A:T.16, A:T.16, A:G.20, A:R.39, A:T.81, A:T.81, A:R.82, A:R.82 Salt bridges: A:R.39, A:R.43, A:R.82, A:R.82 pi-Cation interactions: A:R.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nesbitt, N.M. et al., Small molecule BLVRB redox inhibitor promotes megakaryocytopoiesis and stress thrombopoiesis in vivo. Nat Commun (2025)

Release Date

2025-04-23

Peptides

Flavin reductase (NADPH): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavin reductase (NADPH)

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