SMTL ID : 9c7v.1

Structure of the human BOS:human EMC complex in GDN

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: S.143, H.164, N.182, S.184 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.164 NAG-NAG.2: 6 residues within 4Å: Chain B: D.25, V.27, Y.912, N.913 Chain H: Y.148, F.149 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.25

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain B: N.370, Q.371, L.395, Q.397 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Q.371 Hydrogen bonds: B:N.370 NAG.4: 6 residues within 4Å: Chain A: C.168, R.169 Chain B: N.818, A.819, T.820, D.826 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.819 Hydrogen bonds: B:T.820, B:D.826, A:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Page, K.R. et al., Role of a holo-insertase complex in the biogenesis of biophysically diverse ER membrane proteins. Mol.Cell (2024)

Release Date

2024-08-21

Peptides

ER membrane protein complex subunit 10: A
ER membrane protein complex subunit 1: B
ER membrane protein complex subunit 2: C
ER membrane protein complex subunit 3: D
ER membrane protein complex subunit 4: E
Membrane magnesium transporter 1: F
ER membrane protein complex subunit 6: G
ER membrane protein complex subunit 7: H
ER membrane protein complex subunit 8: I
Nicalin: J
BOS complex subunit NOMO2: K
Transmembrane protein 147: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
10

B
1

C
2

D
3

E
4

F
5

G
6

H
7

I
8

J
A

K
B

L
C

Membrane

We predict this structure to be a membrane protein.
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ER membrane protein complex subunit 10

ER membrane protein complex subunit 1

ER membrane protein complex subunit 2

ER membrane protein complex subunit 3

ER membrane protein complex subunit 4

Membrane magnesium transporter 1

ER membrane protein complex subunit 6

ER membrane protein complex subunit 7

ER membrane protein complex subunit 8

Nicalin

BOS complex subunit NOMO2

Transmembrane protein 147

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