SMTL ID : 9cfl.1

Cryo-EM structure of S. aureus TarGH in complex with ATP-gamma-S

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

3 x AV0: Lauryl Maltose Neopentyl Glycol(Non-covalent)

AV0.1: 14 residues within 4Å: Chain A: L.196, L.199, V.200, L.284, K.287, Y.288, D.294, F.295 Chain B: K.12, E.13, R.15, M.24, T.77 Chain C: Y.60 16 PLIP interactions: 4 interactions with chain B, 8 interactions with chain A, 4 interactions with chain C Hydrogen bonds: B:K.12, B:K.12, B:E.13, B:R.15, A:K.287, A:Y.288 Hydrophobic interactions: A:L.196, A:L.199, A:V.200, A:L.284, C:Y.60, C:Y.60, C:Y.60, C:Y.60 Salt bridges: A:K.287, A:K.287 AV0.2: 14 residues within 4Å: Chain A: V.80, G.84, Y.216, F.217, W.222, N.226, H.227 Chain C: V.80, G.84, Y.216, F.217, W.222, N.226, H.227 13 PLIP interactions: 8 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:V.80, C:F.217, C:W.222, C:W.222, C:W.222, A:V.80, A:F.217, A:W.222, A:W.222 Hydrogen bonds: C:N.226, C:H.227 Salt bridges: C:H.227, A:H.227 AV0.5: 13 residues within 4Å: Chain A: Y.60 Chain C: L.196, L.199, V.200, L.284, K.287, Y.288, D.294, F.295 Chain D: K.12, E.13, R.15, T.77 16 PLIP interactions: 4 interactions with chain D, 8 interactions with chain C, 4 interactions with chain A Hydrogen bonds: D:K.12, D:K.12, D:E.13, D:R.15, C:K.287, C:Y.288 Hydrophobic interactions: C:L.196, C:L.199, C:V.200, C:L.284, A:Y.60, A:Y.60, A:Y.60, A:Y.60 Salt bridges: C:K.287, C:K.287

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.3: 20 residues within 4Å: Chain B: Y.14, F.37, A.39, N.59, G.60, S.61, G.62, K.63, S.64, T.65, H.201, R.260 Chain D: F.136, K.143, Y.144, S.145, S.146, G.147, M.148 Ligands: MG.4 19 PLIP interactions: 14 interactions with chain B, 5 interactions with chain D Hydrogen bonds: B:N.59, B:G.60, B:G.60, B:S.61, B:G.62, B:K.63, B:S.64, B:S.64, B:S.64, B:T.65, B:T.65, D:S.145, D:S.145, D:S.146, D:G.147, D:M.148 Water bridges: B:E.169 Salt bridges: B:K.63 pi-Stacking: B:Y.14 AGS.6: 20 residues within 4Å: Chain B: F.136, K.143, Y.144, S.145, S.146, G.147, M.148 Chain D: Y.14, F.37, A.39, N.59, G.60, S.61, G.62, K.63, S.64, T.65, H.201, R.260 Ligands: MG.7 18 PLIP interactions: 14 interactions with chain D, 4 interactions with chain B Hydrogen bonds: D:N.59, D:G.60, D:G.60, D:S.61, D:G.62, D:K.63, D:S.64, D:S.64, D:S.64, D:T.65, D:T.65, B:S.145, B:S.145, B:S.146, B:G.147 Water bridges: D:E.169 Salt bridges: D:K.63 pi-Stacking: D:Y.14

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain B: S.64 Chain D: S.146 Ligands: AGS.3 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:S.64, H2O.1, H2O.1, H2O.1 MG.7: 3 residues within 4Å: Chain B: S.146 Chain D: S.64 Ligands: AGS.6 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:S.64, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, F.K.K. et al., Cryo-EM analyses unveil details of mechanism and targocil-II mediated inhibition of S. aureus WTA transporter TarGH. Nat Commun (2025)

Release Date

2025-04-23

Peptides

Transport permease protein: AC
Teichoic acids export ATP-binding protein TagH: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Transport permease protein

Teichoic acids export ATP-binding protein TagH

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