SMTL ID : 9mhd.1

Cryo-EM structure of S. aureus TarGH in complex with ATP-gamma-S

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

3 x AV0: Lauryl Maltose Neopentyl Glycol(Non-covalent)

AV0.1: 11 residues within 4Å: Chain A: I.83, Y.214, F.215, W.220, N.224, H.225 Chain D: Y.214, F.215, P.222, N.224, H.225 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain D Hydrophobic interactions: A:I.83, A:F.215, D:F.215, D:P.222, D:H.225 Salt bridges: A:H.225, D:H.225 Hydrogen bonds: D:H.225 AV0.2: 10 residues within 4Å: Chain A: L.197, D.200, K.285, Y.286, Q.289, F.293 Chain B: K.12, E.13, T.77 Chain D: Y.58 8 PLIP interactions: 4 interactions with chain B, 1 interactions with chain D, 3 interactions with chain A Hydrogen bonds: B:K.12, B:E.13, B:E.13, B:E.13, A:Q.289 Hydrophobic interactions: D:Y.58, A:L.197 Salt bridges: A:K.285 AV0.7: 10 residues within 4Å: Chain A: Y.58 Chain C: K.12, E.13, T.77 Chain D: L.197, D.200, K.285, Y.286, Q.289, F.293 8 PLIP interactions: 4 interactions with chain C, 3 interactions with chain D, 1 interactions with chain A Hydrogen bonds: C:K.12, C:E.13, C:E.13, C:E.13, D:Q.289 Hydrophobic interactions: D:L.197, A:Y.58 Salt bridges: D:K.285

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.3: 17 residues within 4Å: Chain B: Y.14, F.37, N.59, G.60, S.61, G.62, K.63, S.64, T.65, H.201 Chain C: F.136, K.143, S.145, S.146, G.147, M.148 Ligands: MG.4 15 PLIP interactions: 10 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:N.59, B:G.60, B:G.62, B:K.63, B:S.64, B:S.64, B:T.65, B:T.65, C:S.145, C:S.145, C:G.147 Salt bridges: B:K.63 pi-Stacking: B:Y.14 Water bridges: C:S.146, C:S.146 AGS.5: 17 residues within 4Å: Chain B: F.136, K.143, S.145, S.146, G.147, M.148 Chain C: Y.14, F.37, N.59, G.60, S.61, G.62, K.63, S.64, T.65, H.201 Ligands: MG.6 15 PLIP interactions: 5 interactions with chain B, 10 interactions with chain C Hydrogen bonds: B:S.145, B:S.145, B:G.147, C:N.59, C:G.60, C:G.62, C:K.63, C:S.64, C:S.64, C:T.65, C:T.65 Water bridges: B:S.146, B:S.146 Salt bridges: C:K.63 pi-Stacking: C:Y.14

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain B: S.64 Chain C: S.146 Ligands: AGS.3 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.64, H2O.1, H2O.1 MG.6: 3 residues within 4Å: Chain B: S.146 Chain C: S.64 Ligands: AGS.5 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.64, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, F.K.K. et al., Cryo-EM analyses unveil details of mechanism and targocil-II mediated inhibition of S. aureus WTA transporter TarGH. Nat Commun (2025)

Release Date

2025-04-23

Peptides

Transport permease protein: AD
Teichoic acids export ATP-binding protein TagH: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
C

B
B

C
D

Membrane

We predict this structure to be a membrane protein.
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Transport permease protein

Teichoic acids export ATP-binding protein TagH

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