SMTL ID : 9cj5.1

Unphosphorylated human p38 alpha bound to pexmetinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.2: 4 residues within 4Å: Chain A: E.81, H.107, E.163, K.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.81, A:K.165 EDO.3: 1 residues within 4Å: Chain A: K.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.118 EDO.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x 01: Pexmetinib

01.4: 16 residues within 4Å: Chain A: V.38, A.51, K.53, R.67, E.71, L.74, L.75, I.84, L.104, V.105, T.106, L.108, H.148, A.157, L.167, D.168 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.38, A:A.51, A:K.53, A:K.53, A:R.67, A:E.71, A:E.71, A:L.74, A:I.84, A:I.84, A:T.106, A:L.167, A:L.167 Hydrogen bonds: A:E.71, A:E.71, A:E.71, A:D.168 pi-Stacking: A:F.169

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.5: 1 residues within 4Å: Chain A: K.287 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stadnicki, E.J. et al., Dual-Action Kinase Inhibitors Influence p38 alpha MAP Kinase Dephosphorylation. Biorxiv (2024)

Release Date

2024-11-13

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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