SMTL ID : 9cli.1

Cryo-EM model derived from localized reconstruction of human adenovirus (Ad5)-hexon-FX complex at 3.6A resolution

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-mer

Ligands

7 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 3 residues within 4Å: Chain C: T.425 Chain D: E.65, E.69 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.425 CA.2: 2 residues within 4Å: Chain D: E.47, E.69 No protein-ligand interaction detected (PLIP) CA.3: 7 residues within 4Å: Chain D: G.51, H.52, E.56, E.66, E.69, V.70 Ligands: CA.4 No protein-ligand interaction detected (PLIP) CA.4: 6 residues within 4Å: Chain D: E.47, G.51, E.56, E.66, E.69 Ligands: CA.3 No protein-ligand interaction detected (PLIP) CA.5: 3 residues within 4Å: Chain D: E.46, R.55, E.56 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:R.55 CA.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.7: 2 residues within 4Å: Chain D: E.54, M.58 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mudrick, H.E. et al., Structure-derived insights from blood factors binding to the surfaces of different adenoviruses. Nat Commun (2024)

Release Date

2024-11-27

Peptides

Hexon protein: ABC
Coagulation factor X: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

D
Z

Hexon protein

Coagulation factor X

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