SMTL ID : 9cms.1

Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (E166V) in complex with ensitrelvir (ESV)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 7YY: 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione(Non-covalent)

7YY.1: 18 residues within 4Å: Chain A: T.24, T.25, T.26, L.27, H.41, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, V.166, D.187, R.188, Q.189 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.25, A:M.165 Hydrogen bonds: A:T.26, A:G.143, A:S.144, A:S.144, A:C.145, A:V.166 pi-Stacking: A:H.41 7YY.2: 18 residues within 4Å: Chain B: T.24, T.25, T.26, L.27, H.41, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, V.166, D.187, R.188, Q.189 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:T.25, B:M.165 Hydrogen bonds: B:T.26, B:G.143, B:S.144, B:S.144, B:C.145, B:V.166 Water bridges: B:H.41 pi-Stacking: B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kovalevsky, A. et al., Effects of SARS-CoV-2 Main Protease Mutations at Positions L50, E166, and L167 Rendering Resistance to Covalent and Noncovalent Inhibitors. J.Med.Chem. (2024)

Release Date

2024-10-16

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase nsp5

Related Entries With Identical Sequence