- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-4-4-4-1-1-mer
- Ligands
- 4 x HCA: 3-HYDROXY-3-CARBOXY-ADIPIC ACID(Non-covalent)
- 4 x ICS: iron-sulfur-molybdenum cluster with interstitial carbon(Non-covalent)(Covalent)
ICS.2: 14 residues within 4Å:- Chain A: V.70, R.96, H.195, Y.229, I.231, C.275, S.278, I.355, G.356, G.357, R.359, F.381, H.442
- Ligands: HCA.1
3 PLIP interactions:3 interactions with chain A,- Salt bridges: A:E.380
- Metal complexes: A:C.275, A:G.357
ICS.6: 14 residues within 4Å:- Chain C: V.70, R.96, H.195, Y.229, I.231, C.275, S.278, G.356, G.357, L.358, R.359, F.381, H.442
- Ligands: HCA.5
4 PLIP interactions:4 interactions with chain C,- Salt bridges: C:E.380
- Metal complexes: C:C.275, C:G.356, C:G.356
ICS.16: 14 residues within 4Å:- Chain H: V.70, R.96, H.195, Y.229, I.231, C.275, I.355, G.356, G.357, L.358, R.359, F.381, H.442
- Ligands: HCA.15
2 PLIP interactions:2 interactions with chain H,- Salt bridges: H:E.380
- Metal complexes: H:C.275
ICS.20: 15 residues within 4Å:- Chain J: V.70, R.96, H.195, Y.229, I.231, C.275, S.278, I.355, G.356, G.357, L.358, R.359, F.381, H.442
- Ligands: HCA.19
2 PLIP interactions:2 interactions with chain J,- Salt bridges: J:E.380
- Metal complexes: J:C.275
- 4 x CLF: FE(8)-S(7) CLUSTER(Non-covalent)
CLF.3: 19 residues within 4Å:- Chain A: C.62, Y.64, P.85, G.87, C.88, Y.91, E.153, C.154, G.185
- Chain B: C.70, P.72, S.92, G.94, C.95, Y.98, F.99, T.152, C.153, S.188
10 PLIP interactions:5 interactions with chain A, 5 interactions with chain B,- Salt bridges: A:E.153
- Metal complexes: A:C.62, A:C.88, A:C.88, A:C.154, B:C.70, B:C.95, B:C.95, B:C.153, B:S.188
CLF.8: 18 residues within 4Å:- Chain C: C.62, Y.64, P.85, G.87, C.88, Y.91, E.153, C.154, G.185
- Chain D: C.70, P.72, S.92, G.94, C.95, Y.98, T.152, C.153, S.188
9 PLIP interactions:5 interactions with chain D, 4 interactions with chain C,- Metal complexes: D:C.70, D:C.95, D:C.95, D:C.153, D:S.188, C:C.62, C:C.88, C:C.154
- Salt bridges: C:E.153
CLF.17: 19 residues within 4Å:- Chain H: C.62, Y.64, P.85, G.87, C.88, Y.91, E.153, C.154, G.185
- Chain I: C.70, P.72, S.92, G.94, C.95, Y.98, F.99, T.152, C.153, S.188
10 PLIP interactions:5 interactions with chain H, 5 interactions with chain I,- Salt bridges: H:E.153
- Metal complexes: H:C.62, H:C.88, H:C.88, H:C.154, I:C.70, I:C.95, I:C.95, I:C.153, I:S.188
CLF.22: 18 residues within 4Å:- Chain J: C.62, Y.64, P.85, G.87, C.88, Y.91, C.154, G.185
- Chain K: C.70, P.72, S.92, G.94, C.95, Y.98, F.99, T.152, C.153, S.188
9 PLIP interactions:4 interactions with chain K, 5 interactions with chain J,- Metal complexes: K:C.70, K:C.95, K:C.153, K:S.188, J:C.62, J:C.88, J:C.88, J:C.154
- Salt bridges: J:E.153
- 4 x FE: FE (III) ION(Non-covalent)
FE.4: 4 residues within 4Å:- Chain B: D.353, D.357
- Chain D: R.108, E.109
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Metal complexes: B:D.353, B:D.353, B:D.357, D:R.108, D:E.109
FE.7: 5 residues within 4Å:- Chain A: K.433
- Chain B: R.108, E.109
- Chain D: D.353, D.357
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Metal complexes: B:R.108, B:E.109, D:D.353, D:D.353, D:D.357
FE.18: 4 residues within 4Å:- Chain I: D.353, D.357
- Chain K: R.108, E.109
4 PLIP interactions:2 interactions with chain I, 2 interactions with chain K- Metal complexes: I:D.353, I:D.357, K:R.108, K:E.109
FE.21: 4 residues within 4Å:- Chain I: R.108, E.109
- Chain K: D.353, D.357
3 PLIP interactions:1 interactions with chain K, 2 interactions with chain I- Metal complexes: K:D.357, I:R.108, I:E.109
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.9: 17 residues within 4Å:- Chain E: G.12, G.13, I.14, G.15, K.16, S.17, T.18, N.186, V.212, P.213, R.214, D.215, V.218, Q.219, Y.241
- Chain F: M.157
- Ligands: MG.10
15 PLIP interactions:15 interactions with chain E- Hydrogen bonds: E:G.13, E:I.14, E:G.15, E:K.16, E:S.17, E:S.17, E:T.18, E:T.18, E:N.186, E:P.213, E:R.214, E:D.215, E:Q.219
- Salt bridges: E:K.16, E:K.42
ADP.12: 18 residues within 4Å:- Chain E: M.157
- Chain F: G.12, G.13, I.14, G.15, K.16, S.17, T.18, N.186, V.212, P.213, R.214, D.215, V.218, Q.219, E.222, Y.241
- Ligands: MG.13
12 PLIP interactions:12 interactions with chain F- Hydrogen bonds: F:G.13, F:I.14, F:G.15, F:K.16, F:S.17, F:T.18, F:N.186, F:P.213, F:D.215, F:Q.219, F:E.222
- Salt bridges: F:K.16
ADP.23: 18 residues within 4Å:- Chain L: G.13, I.14, G.15, K.16, S.17, T.18, K.42, D.44, N.186, V.212, P.213, R.214, D.215, V.218, Q.219, E.222, Y.241
- Ligands: MG.24
15 PLIP interactions:15 interactions with chain L- Hydrogen bonds: L:G.13, L:I.14, L:G.15, L:K.16, L:S.17, L:T.18, L:D.40, L:N.186, L:P.213, L:D.215, L:Q.219, L:E.222, L:Q.237
- Salt bridges: L:K.42, L:K.42
ADP.26: 16 residues within 4Å:- Chain M: G.12, G.13, I.14, G.15, K.16, S.17, T.18, N.186, V.212, R.214, D.215, V.218, Q.219, E.222, Y.241
- Ligands: MG.27
17 PLIP interactions:17 interactions with chain M- Hydrogen bonds: M:G.13, M:G.15, M:K.16, M:S.17, M:T.18, M:T.18, M:D.44, M:N.186, M:Q.219, M:E.222, M:Y.241, M:Y.241
- Water bridges: M:D.44, M:R.188, M:R.214, M:E.222
- Salt bridges: M:K.16
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.10: 2 residues within 4Å:- Chain E: S.17
- Ligands: ADP.9
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:S.17
MG.13: 5 residues within 4Å:- Chain F: S.17, D.40, D.44, D.126
- Ligands: ADP.12
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:S.17
MG.24: 3 residues within 4Å:- Chain L: S.17, D.44
- Ligands: ADP.23
1 PLIP interactions:1 interactions with chain L- Metal complexes: L:S.17
MG.27: 4 residues within 4Å:- Chain M: S.17, D.44, D.126
- Ligands: ADP.26
1 PLIP interactions:1 interactions with chain M- Metal complexes: M:S.17
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.11: 10 residues within 4Å:- Chain E: C.98, A.99, C.133, F.136
- Chain F: C.98, C.133, G.134, F.136
- Chain G: P.119, A.122
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain F,- Metal complexes: E:C.98, E:C.133, F:C.98, F:C.133
SF4.25: 11 residues within 4Å:- Chain L: C.98, A.99, C.133, G.134, F.136
- Chain M: C.98, C.133, G.134, F.136
- Chain N: P.119, A.122
4 PLIP interactions:2 interactions with chain L, 2 interactions with chain M,- Metal complexes: L:C.98, L:C.133, M:C.98, M:C.133
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.14: 8 residues within 4Å:- Chain G: E.41, C.42, G.45, N.46, C.47, G.48, C.50, C.102
4 PLIP interactions:4 interactions with chain G,- Metal complexes: G:C.42, G:C.47, G:C.50, G:C.102
FES.28: 7 residues within 4Å:- Chain N: F.40, E.41, C.42, G.45, C.47, C.50, C.102
4 PLIP interactions:4 interactions with chain N,- Metal complexes: N:C.42, N:C.47, N:C.50, N:C.102
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Narehood, S.M. et al., Structural basis for the conformational protection of nitrogenase from O 2 . Nature (2025)
- Release Date
- 2025-01-15
- Peptides
- Nitrogenase molybdenum-iron protein alpha chain: ACHJ
Nitrogenase molybdenum-iron protein beta chain: BDIK
Nitrogenase iron protein 1: EFLM
Protein FeSII: G
Protein FeSII: N - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CH
HJ
JB
BD
DI
IK
KE
EF
FL
LM
MG
GN
N
SMTL ID : 9cu1.1
Azotobacter vinelandii filamentous 2:2:1 MoFeP:FeP:FeSII-Complex (termini; C1 symmetry)
Nitrogenase molybdenum-iron protein alpha chain
Toggle Identical (ACHJ)Nitrogenase molybdenum-iron protein beta chain
Toggle Identical (BDIK)Nitrogenase iron protein 1
Protein FeSII
Protein FeSII
Related Entries With Identical Sequence
1fp4.1 | 1g20.1 | 1g21.1 | 3u7q.1 | 4nd8.1 | 4tku.1 | 4tkv.1 | 4wna.1 | 5bvg.1 | 5bvh.1 | 5ffi.1 | 5ffi.2 | 5ffi.3 | 5ffi.4 | 5ffi.5 | 5frt.1 | 5frt.2 | 5frt.3 | 5frt.4 | 5vq4.1 | 6bbl.1 | 6cdk.1 | 6o7l.1 | 6o7m.1 | 6o7n.1 | 6o7o.1 | 6o7p.1 | 6o7q.1 | 6o7r.1 | 6o7s.1 more...less...6ug0.1 | 6vxt.1 | 6yav.1 | 6yav.2 | 6yav.3 | 7jrf.1 | 7mci.1 | 7t4h.1 | 7tne.1 | 7tpn.1 | 7tpo.1 | 7tpv.1 | 7tpw.1 | 7tpx.1 | 7tpy.1 | 7tpz.1 | 7tq0.1 | 7tq9.1 | 7tqc.1 | 7tqe.1 | 7tqf.1 | 7tqh.1 | 7tqi.1 | 7tqj.1 | 7tqk.1 | 7ut6.1 | 7ut7.1 | 7ut8.1 | 7ut9.1 | 7uta.1 | 8bts.1 | 8bts.2 | 8dbx.1 | 8dby.1 | 8dfc.1 | 8dfd.1 | 8dpn.1 | 8e3t.1 | 8e3u.1 | 8e3v.1 | 8enm.1 | 8rho.1 | 8rhp.1 | 9cjb.1 | 9cjc.1 | 9cjd.1 | 9cje.1 | 9cjf.1 | 9cqx.1 | 9cqy.1 | 9cqz.1 | 9cr0.1 | 9ctz.1 | 9cu0.1 | 9cu2.1 | 9mly.1 | 9mlz.1 | 9mm0.1 | 9mm1.1