SMTL ID : 9d56.1

Human kidney Dipeptidyl peptidase 4 with N-ter TM

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: I.194, Q.227, N.229, T.231, E.232, K.267 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 6 residues within 4Å: Chain B: I.194, Q.227, N.229, T.231, E.232, K.267 No protein-ligand interaction detected (PLIP)

9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: W.187, V.279, T.280, N.281 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 8 residues within 4Å: Chain A: N.219, T.221, F.222, N.272, Q.308, E.309, Y.330, E.332 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.330 Hydrogen bonds: A:E.309, A:E.332, A:E.332 NAG-NAG.4: 5 residues within 4Å: Chain A: I.319, N.321, T.350, E.677, D.678 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.677 Hydrogen bonds: A:E.677, A:E.677 NAG-NAG.5: 5 residues within 4Å: Chain A: V.78, N.80, Y.83, N.85, S.87 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain B: W.187, V.279, T.280, N.281 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 5 residues within 4Å: Chain B: N.219, T.221, Q.308, Y.330, E.332 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.330 Hydrogen bonds: B:E.332, B:E.332 NAG-NAG.9: 4 residues within 4Å: Chain B: I.319, N.321, T.350, D.678 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 6 residues within 4Å: Chain B: V.78, N.80, Y.83, N.85, S.86, S.87 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 4 residues within 4Å: Chain B: E.73, N.74, N.75, N.92 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.12: 2 residues within 4Å: Chain A: I.148, N.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.150 NAG.13: 5 residues within 4Å: Chain A: E.73, N.74, N.75, E.91, N.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.74, A:N.75, A:N.92 NAG.14: 4 residues within 4Å: Chain B: R.147, I.148, P.149, N.150 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:R.147 Hydrogen bonds: B:N.150, B:N.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., human kidney Dipeptidyl peptidase 4 with N-ter TM. To Be Published

Release Date

2025-08-06

Peptides

Dipeptidyl peptidase 4 membrane form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl peptidase 4 membrane form

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