SMTL ID : 9diy.1

Local Cryo-EM structure of HCMV gH/UL116 interaction

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: H.159, F.163, N.164 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 6 residues within 4Å: Chain C: M.13, W.45, N.118, Y.119, S.120, H.121 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: N.34, N.39, S.40, V.43 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.34, A:N.39, A:S.40 NAG.4: 3 residues within 4Å: Chain A: R.25, E.26, N.27 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.26, A:N.27, A:N.27 NAG.5: 5 residues within 4Å: Chain B: P.225, R.226, N.227, A.233, H.234 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.227 NAG.6: 4 residues within 4Å: Chain B: A.241, G.242, N.243, Q.244 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Q.244 Hydrogen bonds: B:N.243 NAG.7: 4 residues within 4Å: Chain A: N.57 Chain B: N.189, L.190, N.191 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.189, B:N.191 NAG.8: 3 residues within 4Å: Chain B: Q.195, Y.196, N.198 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.198 NAG.9: 2 residues within 4Å: Chain B: S.229, N.230 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain C: T.86, W.87, N.88 No protein-ligand interaction detected (PLIP) NAG.11: 5 residues within 4Å: Chain C: G.31, E.32, Q.33, Y.84, N.103 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Y.84 Hydrogen bonds: C:G.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Norris, M.J. et al., A noncanonical glycoprotein H complex enhances cytomegalovirus entry. Biorxiv (2024)

Release Date

2024-11-20

Peptides

Envelope glycoprotein H: A
UL116: B
Protein UL141: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Envelope glycoprotein H

UL116

Protein UL141

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