SMTL ID : 9dlh.1

donor substrate analog-bound AftB

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x 01: 2-deoxy-2-fluoro-1-O-[(S)-hydroxy{[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]oxy}phosphoryl]-beta-D-arabinofuranose

01.1: 18 residues within 4Å: Chain A: D.62, I.65, V.66, A.89, N.90, T.91, L.171, E.172, R.221, P.222, E.223, A.225, L.226, T.274, A.275, Y.360, Q.364, R.372 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:P.222, A:P.222, A:A.225, A:L.226, A:Y.360, A:Y.360 Hydrogen bonds: A:D.62, A:N.90, A:T.91, A:E.172, A:E.172, A:R.221 Salt bridges: A:R.221, A:R.372, A:R.372 Halogen bonds: A:T.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Mechanistic studies of mycobacterial glycolipid biosynthesis by the mannosyltransferase PimE. Nat Commun (2025)

Release Date

2025-06-25

Peptides

Arabinosyltransferase AftB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Membrane

We predict this structure to be a membrane protein.
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Arabinosyltransferase AftB

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