SMTL ID : 9dmc.1 (3 other biounits)

Human PARP1 ART domain bound to NAD+ analog benzamide adenine dinucleotide and ADP-ribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x DQV: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5S)-5-(3-carbamoylphenyl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)(Non-covalent)

DQV.1: 20 residues within 4Å: Chain A: H.121, G.122, S.123, N.127, G.130, I.131, Q.134, G.135, L.136, R.137, A.139, Y.148, M.149, Y.155, F.156, K.162, S.163, Y.166, E.247 Ligands: APR.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.155, A:Y.166, A:Y.166 Hydrogen bonds: A:H.121, A:G.122, A:G.122, A:S.123, A:G.135, A:R.137, A:Y.148, A:M.149, A:E.247

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.2: 10 residues within 4Å: Chain A: H.85, M.149, K.162, Y.166, A.194, L.243, L.244, Y.245, E.247 Ligands: DQV.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.166, A:L.244, A:Y.245, A:Y.245 Salt bridges: A:H.85, A:K.162, A:K.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langelier, M.F. et al., PARP enzyme de novo synthesis of protein-free poly(ADP-ribose). Mol.Cell (2024)

Release Date

2025-02-05

Peptides

Poly [ADP-ribose] polymerase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly [ADP-ribose] polymerase 1

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