SMTL ID : 9dn4.1 (1 other biounit)

Crystal structure of a SARS-CoV-2 20-mer RNA in complex with FAB BL3-6S97N

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL

GOL.1: 4 residues within 4Å: Chain A: Q.56, K.64, P.78, F.81 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.56 Water bridges: A:L.65, A:R.80, A:E.100 GOL.7: 5 residues within 4Å: Chain B: A.43, S.44, G.45, Y.47, N.96 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.45, B:N.96 GOL.8: 8 residues within 4Å: Chain B: I.48, S.49, S.51, I.70, S.71, P.72, A.91, T.93 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.51, B:S.71 Water bridges: B:Y.73

4 x CL: CHLORIDE ION

CL.2: 2 residues within 4Å: Chain A: R.43, T.88 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: P.78, S.79 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: K.209, R.230 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain B: G.146 Ligand excluded by PLIP

3 x SO4: SULFATE ION

SO4.5: 2 residues within 4Å: Chain A: S.49, R.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.47 Salt bridges: A:R.85 SO4.6: 3 residues within 4Å: Chain A: P.27, S.28, S.29 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.28, A:S.28, A:S.29 SO4.10: 3 residues within 4Å: Chain B: T.135, L.136, P.177 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.135, B:L.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovell, S. et al., Crystal structure of a SARS-CoV-2 20-mer RNA in complex with FAB BL3-6S97N. To be published

Release Date

2024-09-25

Peptides

FAB BL3-6S97N LIGHT CHAIN: A
FAB BL3-6S97N HEAVY CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

FAB BL3-6S97N LIGHT CHAIN

FAB BL3-6S97N HEAVY CHAIN

Related Entries With Identical Sequence