SMTL ID : 9dn4.2 (1 other biounit)

Crystal structure of a SARS-CoV-2 20-mer RNA in complex with FAB BL3-6S97N

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL

GOL.1: 5 residues within 4Å: Chain A: R.126 Chain B: S.49, S.50, A.51, S.69 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.49, B:S.49, A:R.126 GOL.4: 7 residues within 4Å: Chain B: Q.56, K.58, K.64, P.78, R.80, F.81 Ligands: CL.5 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.56, B:K.58, B:R.80 Water bridges: B:Q.56, B:G.76

3 x CL: CHLORIDE ION

CL.2: 2 residues within 4Å: Chain A: K.145, G.146 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: K.58, K.64 Ligands: GOL.4 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain C: G.4 Ligand excluded by PLIP

4 x SO4: SULFATE ION

SO4.3: 4 residues within 4Å: Chain A: G.134, T.135, L.136, P.177 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.134, A:T.135, A:L.136 SO4.6: 4 residues within 4Å: Chain A: P.151 Chain B: S.140, D.141, E.142 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.141, B:E.142 SO4.7: 2 residues within 4Å: Chain B: D.20, Q.22 No protein-ligand interaction detected (PLIP) SO4.9: 2 residues within 4Å: Chain C: A.13, C.14 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovell, S. et al., Crystal structure of a SARS-CoV-2 20-mer RNA in complex with FAB BL3-6S97N. To be published

Release Date

2024-09-25

Peptides

FAB BL3-6S97N HEAVY CHAIN: A
FAB BL3-6S97N LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FAB BL3-6S97N HEAVY CHAIN

FAB BL3-6S97N LIGHT CHAIN

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