SMTL ID : 9dnq.2 (1 other biounit)

Structure of UBR2-RYF complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

monomer

Ligands

1 x ARG- TYR- PHE- NH2: ARG-TYR-PHE-NH2(Non-covalent)

ARG-TYR-PHE-NH2.1: 12 residues within 4Å: Chain A: T.28, C.29, V.30, T.50, S.51, G.52, G.54, G.55, F.56, D.58, D.61, A.64 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.28, A:V.30 Hydrogen bonds: A:T.28, A:G.52, A:F.56, A:F.56 Water bridges: A:T.28, A:G.52, A:D.58 Salt bridges: A:D.58, A:D.61

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.7, C.32, C.35, C.57 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.32, A:C.35, A:C.57 ZN.3: 4 residues within 4Å: Chain A: C.35, C.59, C.71, H.74 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.35, A:C.59, A:C.71, A:H.74 ZN.4: 4 residues within 4Å: Chain A: C.20, C.23, H.41, H.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:H.41, A:H.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, S. et al., Structural Flexibility and Selectivity of N-End Rule Ligases. To Be Published

Release Date

2025-08-13

Peptides

E3 ubiquitin-protein ligase UBR2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase UBR2

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