SMTL ID : 9dqv.1

Structure of western equine encephalitis virus CBA87 VLP in complex with human PCDH10 EC1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.30 Å

Oligo State

hetero-4-4-4-4-mer

Ligands

16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.1: 2 residues within 4Å: Chain A: N.139, H.327 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain A: N.245 Ligand excluded by PLIP NAG.3: 1 residues within 4Å: Chain B: N.196 Ligand excluded by PLIP NAG.4: 3 residues within 4Å: Chain B: W.279, T.284, N.318 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain D: G.138, N.139, H.327 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain D: N.245 Ligand excluded by PLIP NAG.7: 1 residues within 4Å: Chain E: N.196 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain E: W.279, T.284, N.318 Ligand excluded by PLIP NAG.9: 5 residues within 4Å: Chain G: G.138, N.139, T.140, A.286, H.327 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain G: N.245 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain H: N.196 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain H: W.279, T.284, N.318 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain M: N.139, H.327, H.345 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain M: N.245, N.246 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain N: N.196 Ligand excluded by PLIP NAG.16: 3 residues within 4Å: Chain N: W.279, T.284, N.318 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abraham, J. et al., Structure of western equine encephalitis virus CBA87 VLP in complex with human PCDH10 EC1. To Be Published

Release Date

2025-03-26

Peptides

Structural polyprotein: ADGM
Structural polyprotein: BEHN
Capsid protein: CFIO
Protocadherin-10: JKLP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

D
G

G
J

M
A

B
E

E
H

H
K

N
B

C
F

F
I

I
L

O
C

J
M

K
N

L
O

P
P

Membrane

We predict this structure to be a membrane protein.
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Structural polyprotein

Structural polyprotein

Capsid protein

Protocadherin-10

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