SMTL ID : 9dtp.1 (1 other biounit)

GlfT2 from Nocardia brasiliensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.288, D.290, H.427 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.288, A:D.290, A:D.290 MG.5: 3 residues within 4Å: Chain B: D.288, D.290, H.427 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.288, B:D.290, B:D.290, B:H.427 MG.9: 3 residues within 4Å: Chain C: D.288, D.290, H.427 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.288, C:D.290, C:D.290 MG.13: 3 residues within 4Å: Chain D: D.288, D.290, H.427 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.288

4 x TRT: FRAGMENT OF TRITON X-100(Non-covalent)

TRT.2: 8 residues within 4Å: Chain A: L.476, V.558, N.561, L.562, P.610, A.613, L.614, F.617 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.476, A:V.558, A:N.561, A:L.562, A:P.610, A:A.613, A:L.614, A:F.617 TRT.6: 7 residues within 4Å: Chain B: V.558, N.561, L.562, P.610, R.611, L.614, F.617 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.558, B:N.561, B:L.562, B:L.614, B:F.617 TRT.10: 8 residues within 4Å: Chain C: L.475, L.476, N.561, L.562, P.610, A.613, L.614, F.617 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.475, C:L.476, C:L.562, C:A.613, C:F.617, C:F.617 TRT.14: 9 residues within 4Å: Chain D: L.475, L.476, V.558, N.561, L.562, P.610, A.613, L.614, F.617 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:L.475, D:L.476, D:L.562, D:P.610, D:A.613, D:L.614, D:F.617, D:F.617

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: W.341, K.400, W.401, D.403 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.341, A:W.401, A:D.403 GOL.4: 3 residues within 4Å: Chain A: K.461, V.464, I.468 No protein-ligand interaction detected (PLIP) GOL.7: 5 residues within 4Å: Chain B: W.341, K.400, W.401, D.403, W.430 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.401, B:D.403 GOL.8: 5 residues within 4Å: Chain B: I.468, M.621, R.624, K.625, A.628 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:M.621 GOL.11: 6 residues within 4Å: Chain C: W.341, K.400, W.401, D.403, V.404, H.444 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:W.401, C:D.403, C:H.444 GOL.12: 6 residues within 4Å: Chain C: K.461, V.464, I.468, R.624, K.625, A.628 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.624 GOL.15: 5 residues within 4Å: Chain D: W.341, K.400, W.401, D.403, V.404 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:W.401, D:W.401, D:D.403

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carter, A.W. et al., GlfT2 from Nocardia brasiliensis. To Be Published

Release Date

2025-10-08

Peptides

Galactofuranosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
F

D
G

Galactofuranosyltransferase

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